COMPARATIVE ANALYSIS OF MACHINE LEARNING ALGORITHMS WITH PRINCIPAL COMPONENT ANALYSIS FOR BREAST CANCER PREDICTION

Authors

  • Lusiana Gulo Institut Bisnis Dan Teknologi Pelita Indonesia
  • Gustientiedina Gustientiedina Institut Bisnis dan Teknologi Pelita Indonesia
  • Deny Jollyta Institut Bisnis dan Teknologi Pelita Indonesia
  • Wilda Susanti Institut Bisnis dan Teknologi Pelita Indonesia
  • Alyauma Hajjah Institut Bisnis dan Teknologi Pelita Indonesia

DOI:

https://doi.org/10.35145/joisie.v10i1.5677

Keywords:

Breast Cancer, Machine Learning, Early Detection, Principal Component Analysis

Abstract

Breast cancer is the leading cause of cancer death in Indonesia and globally, making early detection crucial. This study aims to compare the performance of Machine Learning algorithms (K-Nearest Neighbor/KNN, Support Vector Machine/SVM, Logistic Regression, Random Forest, and Decision Tree) in predicting breast cancer types using the Wisconsin Breast Cancer dataset. This dataset consists of 569 samples and is divided into training and testing sets using an 80:20 ratio. Evaluation methods include accuracy, precision, recall, F1-Score, and dimensionality reduction impact analysis using Principal Component Analysis (PCA). This study contributes by providing a comparative evaluation of several machine learning algorithms before and after PCA implementation. The results show that Random Forest achieved the highest accuracy (0.97) before PCA implementation but experienced a moderate decrease (0.94) after dimensionality reduction. KNN showed the highest consistency, maintaining a stable accuracy of 0.94 both before and after PCA. This study concludes that Random Forest is the most effective algorithm when using the full feature set, while KNN shows greater stability after dimensionality reduction, thus this study recommends KNN as a reliable solution to support accurate and efficient breast cancer diagnosis and early detection.

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References

Abdi, H., & Williams, L. J. (2010). Principal component analysis. Wiley Interdisciplinary Reviews: Computational Statistics, 2(4), 433–459. https://doi.org/10.1002/wics.101

Al Reshan, M. S., Amin, S., Zeb, M. A., Sulaiman, A., Alshahrani, H., Azar, A. T., & Shaikh, A. (2023). Enhancing breast cancer detection and classification using advanced multi-model features and ensemble machine learning techniques. Life, 13(10), 2093. https://doi.org/10.3390/life13102093

Bray, F., Laversanne, M., Sung, H., Ferlay, J., Siegel, R. L., Soerjomataram, I., & Jemal, A. (2024). Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: A Cancer Journal for Clinicians, 74(3), 229–263. https://doi.org/10.3322/caac.21834

Chicco, D., & Jurman, G. (2020). The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation. BMC Genomics, 21, 6. https://doi.org/10.1186/s12864-019-6413-7

Dhahri, H., Al Maghayreh, E., Mahmood, A., Elkilani, W., & Nagi, M. F. (2019). Automated breast cancer diagnosis based on machine learning algorithms. Journal of Healthcare Engineering, 2019, 4253641. https://doi.org/10.1155/2019/4253641

Houfani, D., Slatnia, S., Kazar, O., Remadna, I., Saouli, H., Ortiz, G., & Merizig, A. (2023). An improved model for breast cancer diagnosis by combining PCA and logistic regression techniques. International Journal of Computing and Digital Systems, 13(1), 701–716. https://doi.org/10.12785/ijcds/130156

O?mia?owska, E., Misi?g, W., Chabowski, M., & Jankowska-Pola?ska, B. (2021). Coping strategies, pain, and quality of life in patients with breast cancer. Journal of Clinical Medicine, 10(19), 4469. https://doi.org/10.3390/jcm10194469

Rajkomar, A., Dean, J., & Kohane, I. (2019). Machine learning in medicine. The New England Journal of Medicine, 380(14), 1347–1358. https://doi.org/10.1056/NEJMra1814259

Sarker, I. H. (2021). Machine learning: Algorithms, real-world applications and research directions. SN Computer Science, 2, 160. https://doi.org/10.1007/s42979-021-00592-x

Ungvari, Z., Fekete, M., Buda, A., Lehoczki, A., Munkácsy, G., Scaffidi, P., Bonaldi, T., Fekete, J. T., Bianchini, G., Varga, P., Ungvari, A., & Gy?rffy, B. (2026). Quantifying the impact of treatment delays on breast cancer survival outcomes: A comprehensive meta-analysis. GeroScience, 48(1), 1173–1187. https://doi.org/10.1007/s11357-025-01719-1

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Published

2026-06-30

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